[Answer] What is the SNP allele frequency?

Answer: 18 million SNPs are present in >1% of the population (1 in every 162 bp)

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What is the SNP allele frequency? Single-nucleotide polymorphism - Wikipedia Minor allele frequency - Wikipedia AlleleFrequency - Definition Calculation Example ... Single nucleotide polymorphism (SNP) allele freque ncy estimation in DNA pools using Pyrosequencing. Lavebratt C (1) Sengul S. Identifying the genetic variation underlying complex disease requires analysis of many single nucleotide polymorphisms (SNPs) in a large number of samples. A genotype data for Genome Wide Association Analysis (GWAS) is provided as 0 1 and 2 format where individuals along the row and each column is a SNP. The minor allele frequency (MAF) is... More than 335 million SNPs have been found across humans from multiple populations. A typical genome differs from the reference human genome at 4 to 5 million sites most of which (more than 99.9%) consist of SNPs and short indels. The genomic distribution of SNPs is not homogenous; SNPs occur in non-coding regions more frequently than in coding regions or in general where natural selection is acting and "fixing" the allele(eliminating o… 1. Introduce the reference of a SNP of interest as an example: rs429358 in a database (dbSNP or other). 2. Find MAF/MinorAlleleCount link. MAF/MinorAlleleCount: C=0.1506/754 (1000 Genomes); where C is the minor allele for that particular locus; 0.1506 is the frequency of the C allele (MAF) i.e. 15% within the 1000...

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